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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015827951.1_cds_XP_016503261.1_16820
CDS Infomation

[gene=LOC107821340] [db_xref=GeneID:107821340] [protein=E3 ubiquitin-protein ligase COP1-like isoform X2] [protein_id=XP_016503261.1] [location=join(97654..97950,101516..101593,102254..102409,102772..103131,105991..106148,106250..106315,106676..106754,107974..108129,108215..108313,110822..110950,111625..111798,111964..112074,112147..112317)] [gbkey=CDS]
Sequence

ATGGTGGAAAGTTCGATTGGGGGAGTGGTACCAGCAGTGAAGGGGTCAGTGAGGGTGGGG
GTTAAAGAGGAGGGGGGTGGTAGTGTAAGGGATGAAGGTGAAACAGAATGGGAATTGGAT
AGGGAATTATTATGCCCAATTTGTATGCAGATTATAAAGGATGCATTTTTAACTTCCTGT
GGCCATAGTTTTTGCTATATGTGTATAATCACTCACCTTCACAATAAGAGTGATTGTCCC
TGTTGTTCTCATTATCTTACCACTAGTCAACTCTACCCTAATTTCCTCCTAGACAAGCTA
CTGAAGAAGACATCTGCTCGTCAGATTTCAAAAACTGCATCTCCTGTTGAACAATTTCGT
CTTTCATTGGAACAGGGTTGTGATGTATCAGTTAAGGAGCTGGATGCTCTATTGTCGATG
TTGTCAGAGAGAAAGAGGAAATTGGAGCAGGAAGAAGCAGAGCGAAATATGCAAATTCTG
CTAGACTTCTTACAAATGTTAAGGAAGCAAAAAGTTGATGAACTCAATGAGGTGCAACAT
GATCTGCAATACATCAAAGAGGACATAAGTGCAGTGGAGAGACATAGAATAGACCTATAC
CGGGCTAGGGACCGGTACTCAATGAAGCTTCGAATGCTAGCAGATGATCCAATTGGGAAA
AAACCTTGGTCTTCATCCACTGATAGGAACTTTGGTGGTCTTTTCTCCACTTCACGGAAT
GCACCTGGAGGATTACCTACTGGAAACTTGACATACAAAAGGGTGGAAGGCAAAGCTCAA
ATAAGCTCTCCTGGACCACATAGAAAAGATACTTCTACCAGTGAATTGAATTCACAACAT
ATGAGTCAATCAGGTCTGGCTGTGGTGAGGAAGAAGCGTGTAAATGCACAGTTCAATGAT
CTCCAAGAATGTTACTTGCAAAAGAGACGTCTATTGGCGAACAAATCGCATGTTAAGGAG
GAAAAGGACATAGATGACGTAAAAAGAGAAGGTTACAGTGCAGGGCTAGAAGATTTCCAG
TCTGTACTTAGCACTTTCACTCGTTATAGTCGGTTAAGAGTCATTGCTGAGCTTCGGCAT
GGGGATCTTTTTCACTCAGCCAATATCGTGTCAAGCATCGAATTTGATCGTGATGATGAG
TTGTTTGCTACTGCTGGAGTTTCACGGCGCATAAAAGTTTTTGACTTCTCTTCGGTTGTA
AATGAACCTGCAGATGTGCATTGCCCTGTTGTCGAAATGTCAACTCGTTCTAAGCTGAGC
TGCTTGAGCTGGAATAAGTATACCAAGAACCACATAGCAAGTAGCGATTATGATGGAATA
GTAACTGTATGGGATGTGACCACTAGACAGAGTGTGATGGAATATGAAGAGCATGAGAAA
CGGGCATGGAGTGTTGATTTTTCACGCACAGACCCCTCGATGCTTGTATCTGGCAGTGAT
GATTGTAAGGTCAAAGTTTGGTGCACTAAGCAGGAAGCAAGTGTTCTTAATATTGACATG
AAGGCGAATATATGCTGTGTAAAATATAATCCTGGATCTGGTGTGCATATAGCGGTAAAT
TCCTTATTTTATATAGAGATTCTTCATTATATGTTCCTTAAAAATTTCTGGATTTGGAGC
ATCAATTTCTCATATAGTTCAGTCCGTGTTTCAACTCCCCCTCCCCNCGTAAAATTTTTG
TCCAACAATGAGCTTGCTTCAGCATCAACAGATAGTACACTACGGTTGTGGGATGTAAAA
GAAAATCTGCCTATTCGCACACTTAGAGGACATACAAACGAGAAAAACTTTGTTGGTCTC
ACAGTAAACAATGAATTCCTCGCTTGTGGCAGTGAAACAAATGAAGTATTTGTGTACCAT
AAGGCGATCTCCAAACCTGTTACTTGGCATAGATTTGGTTCCCCAGATGTGGATGATGCC
GATGAAGACGCAGGATCTTATTTCATTAGCGCGGTATGTTGGAAGAGTGATAGCCCTACG
ATGTTAGCCGCTAACAGCCAGGGAACTATAAAAGTGCTAGTCCTTGCAGCCTGA

Peptide Sequence

PEP ID

XP_016503261.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X2 [Nicotiana tabacum]
Sequence

MVESSIGGVVPAVKGSVRVGVKEEGGGSVRDEGETEWELDRELLCPICMQIIKDAFLTSC
GHSFCYMCIITHLHNKSDCPCCSHYLTTSQLYPNFLLDKLLKKTSARQISKTASPVEQFR
LSLEQGCDVSVKELDALLSMLSERKRKLEQEEAERNMQILLDFLQMLRKQKVDELNEVQH
DLQYIKEDISAVERHRIDLYRARDRYSMKLRMLADDPIGKKPWSSSTDRNFGGLFSTSRN
APGGLPTGNLTYKRVEGKAQISSPGPHRKDTSTSELNSQHMSQSGLAVVRKKRVNAQFND
LQECYLQKRRLLANKSHVKEEKDIDDVKREGYSAGLEDFQSVLSTFTRYSRLRVIAELRH
GDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADVHCPVVEMSTRSKLS
CLSWNKYTKNHIASSDYDGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSRTDPSMLVSGSD
DCKVKVWCTKQEASVLNIDMKANICCVKYNPGSGVHIAVNSLFYIEILHYMFLKNFWIWS
INFSYSSVRVSTPPPXVKFLSNNELASASTDSTLRLWDVKENLPIRTLRGHTNEKNFVGL
TVNNEFLACGSETNEVFVYHKAISKPVTWHRFGSPDVDDADEDAGSYFISAVCWKSDSPT
MLAANSQGTIKVLVLAA

Transcript Sequence

Gene sequence data has not been registered.